PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.4G100400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 286aa    MW: 31948.2 Da    PI: 4.5161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.4G100400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-09168212655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++ r RR+ri ++ +eL +l+P a     +K++ ae+L+ A +Y+k Lq
  Prupe.4G100400.1.p 168 SIAARERRRRITEKTQELGRLIPGA-----TKMNTAEMLQAAYKYVKFLQ 212
                         677899******************9.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.703162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11166221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-11166220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-7168212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-9168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.14E-5178216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MMSSFCPADD WGSLQFLNPD MNMVSFQAQQ EQLAAASGIL GLQDYSLPNL PDYTTCIDPL  60
FETYESSSSE NFLLPDFYLP TENINLSSFQ SPEIFPSLDE YGCSYQQNPK RQKFGVCSFF  120
NAYDDQFLQP QLLAPTPSPQ TQIPQQPSYE CAKMNKPNGG AVTLSAQSIA ARERRRRITE  180
KTQELGRLIP GATKMNTAEM LQAAYKYVKF LQAQVSVLKL MTDSPVHQEK KDLQAVASPI  240
VQEKLYAEEK CLVSKEFVQV LANDHDIESK PLLKDSVAQL LQTNG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225759.10.0PREDICTED: transcription factor bHLH52
TrEMBLM5WWF91e-158M5WWF9_PRUPE; Uncharacterized protein
STRINGPOPTR_0011s16100.14e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.15e-22bHLH family protein